General Information

Software Carpentry's mission is to help scientists and engineers get more research done in less time and with less pain by teaching them basic lab skills for scientific computing. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems.

For more information on what we teach and why, please see our paper "Best Practices for Scientific Computing".

Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop.

Where: Kessels Rd, Nathan. Get directions with OpenStreetMap or Google Maps.

Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating sytem (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below). They are also required to abide by Software Carpentry's Code of Conduct.

Accessibility: We are committed to making this workshop accessible to everybody. The workshop organisers have checked that:

• The room is wheelchair / scooter accessible.
• Accessible restrooms are available.

Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch and we will attempt to provide them.

Contact: Please mail a.miotto@griffith.edu.au for more information.

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Schedule

Surveys

Please be sure to complete these surveys before and after the workshop.

Pre-workshop Survey

Post-workshop Survey

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Syllabus

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Setup

To participate in a Software Carpentry workshop, you will need access to the software described below. In addition, you will need an up-to-date web browser.

We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.

Lesson R Important links, lessons and data

Lessons online : http://swcarpentry.github.io/r-novice-inflammation/

Data to download: http://swcarpentry.github.io/r-novice-inflammation/files/r-novice-inflammation-data.zip

We are gong to download this directly into RStudio if possible however if you need to download to your computer, use the following...

Please unzip after downloading. If you are in Mac or Linux, you can use the following commands:

Windows: you can download it and move it to the folder you plan on working in, then unzip it by right clicking

Mac:

curl -O http://swcarpentry.github.io/r-novice-inflammation/files/r-novice-inflammation-data.zip

unzip r-novice-inflammation-data.zip

Linux:

wget http://swcarpentry.github.io/r-novice-inflammation/files/r-novice-inflammation-data.zip

unzip r-novice-inflammation-data.zip

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